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Bioconductor - BreastSubtypeR

BreastSubtypeR

This is the released version of BreastSubtypeR; for the devel version, see BreastSubtypeR.

Methods for breast cancer intrinsic subtyping

Bioconductor version: Release (3.21)

BreastSubtypeR is an R package that provides a collection of methods for intrinsic molecular subtyping of breast cancer. It includes subtyping methods for nearest centroid-based subtyping (NC-based) and single sample predictor (SSP-based), along with tools for integrating clinical data and visualizing results.

Author: Qiao Yang [aut, cre, fnd] ORCID: 0000-0002-4098-3246

Maintainer: Qiao Yang <yq.kiuo at gmail.com>

Citation (from within R, enter citation("BreastSubtypeR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BreastSubtypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BreastSubtypeR")
Details biocViews Classification, GeneExpression, RNASeq, Software Version 1.0.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License GPL (>= 3) Depends R (>= 4.5.0) Imports methods, Biobase, tidyselect, dplyr, ggplot2, magrittr, rlang, stringr, withr, ComplexHeatmap, impute(>= 1.80.0), data.table (>= 1.16.0), RColorBrewer (>= 1.1-3), circlize (>= 0.4.16), ggrepel (>= 0.9.6), e1071 (>= 1.7-8), SummarizedExperiment System Requirements URL https://github.com/yqkiuo/BreastSubtypeR Bug Reports https://github.com/yqkiuo/BreastSubtypeR/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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