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Bioconductor - BiocFileCache

BiocFileCache

This is the released version of BiocFileCache; for the devel version, see BiocFileCache.

Manage Files Across Sessions

Bioconductor version: Release (3.21)

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

Author: Lori Shepherd [aut, cre], Martin Morgan [aut]

Maintainer: Lori Shepherd <lori.shepherd at roswellpark.org>

Citation (from within R, enter citation("BiocFileCache")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocFileCache")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocFileCache")

Details biocViews DataImport, Software Version 2.16.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 3.4.0), dbplyr (>= 1.0.0) Imports methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl, httr System Requirements URL Bug Reports https://github.com/Bioconductor/BiocFileCache/issues See More Suggests testthat, knitr, BiocStyle, rmarkdown, rtracklayer Linking To Enhances Depends On Me AnnotationHub, easylift, ExperimentHub, RcwlPipelines, JASPAR2022, JASPAR2024, scATAC.Explorer, TMExplorer, csawBook, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.workflows Imports Me AlphaMissenseR, AMARETTO, atSNP, autonomics, BayesSpace, bedbaser, BiocCheck, BiocHail, BiocPkgTools, biodb, biomaRt, brendaDb, bugsigdbr, BulkSignalR, cbaf, cBioPortalData, CBNplot, CellBench, CTDquerier, customCMPdb, CytoPipeline, DeconvoBuddies, easyRNASeq, enhancerHomologSearch, EnMCB, EnrichmentBrowser, EpiTxDb, fenr, fgga, GeDi, GenomicScores, GenomicSuperSignature, ggkegg, GSEABenchmarkeR, gwascat, hca, iSEEindex, MBQN, MIRit, motifbreakR, MotifPeeker, MsBackendMetaboLights, OmicsMLRepoR, ontoProc, ORFik, Organism.dplyr, OSTA.data, PhIPData, psichomics, rBLAST, recount3, recountmethylation, regutools, ReUseData, RiboDiPA, rpx, scviR, sesame, signeR, spacexr, SpatialExperiment, SpatialOmicsOverlay, SpliceWiz, SurfR, tenXplore, terraTCGAdata, TFutils, tomoseqr, tximeta, UMI4Cats, UniProt.ws, waddR, xenLite, geneplast.data, HPO.db, MPO.db, org.Mxanthus.db, PANTHER.db, BioPlex, bugphyzz, depmap, DNAZooData, fourDNData, HiContactsData, MetaScope, MicrobiomeBenchmarkData, NxtIRFdata, orthosData, SFEData, SingleCellMultiModal, spatialLIBD, SingscoreAMLMutations, convertid Suggests Me AnnotationForge, bambu, BiocSet, ChIPpeakAnno, CoGAPS, CRISPRseek, dominoSignal, EpiCompare, fastreeR, FLAMES, GRaNIE, HicAggR, HiCDCPlus, HiCExperiment, HiCool, MethReg, MetMashR, Nebulosa, nipalsMCIA, progeny, qsvaR, seqsetvis, spatialHeatmap, structToolbox, TREG, visiumStitched, XeniumIO, zellkonverter, emtdata, HighlyReplicatedRNASeq, MethylSeqData, msigdb, TENxBrainData, TENxPBMCData, chipseqDB, fluentGenomics, simpleSingleCell, scCustomize Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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