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Bioconductor - Anaquin

Anaquin

This is the released version of Anaquin; for the devel version, see Anaquin.

Statistical analysis of sequins

Bioconductor version: Release (3.21)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")
Details biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software Version 2.32.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License BSD_3_clause + file LICENSE Depends R (>= 3.3), ggplot2 (>= 2.2.0) Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2 System Requirements URL www.sequin.xyz Bug Reports https://github.com/student-t/RAnaquin/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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