This is the released version of ramr; for the devel version, see ramr.
Detection of Rare Aberrantly Methylated Regions in Array and NGS DataBioconductor version: Release (3.21)
ramr is an R package for detection of epimutations (i.e., infrequent aberrant DNA methylation events) in large data sets obtained by methylation profiling using array or high-throughput methylation sequencing. In addition, package provides functions to visualize found aberrantly methylated regions (AMRs), to generate sets of all possible regions to be used as reference sets for enrichment analysis, and to generate biologically relevant test data sets for performance evaluation of AMR/DMR search algorithms.
Author: Oleksii Nikolaienko [aut, cre] ORCID: 0000-0002-5910-4934
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko at gmail.com>
Citation (from within R, entercitation("ramr")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ramr")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ramr")Follow Installation instructions to use this package in your R session.
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