This is the released version of comapr; for the devel version, see comapr.
Crossover analysis and genetic map constructionBioconductor version: Release (3.21)
comapr detects crossover intervals for single gametes from their haplotype states sequences and stores the crossovers in GRanges object. The genetic distances can then be calculated via the mapping functions using estimated crossover rates for maker intervals. Visualisation functions for plotting interval-based genetic map or cumulative genetic distances are implemented, which help reveal the variation of crossovers landscapes across the genome and across individuals.
Author: Ruqian Lyu [aut, cre] ORCID: 0000-0002-7736-6612
Maintainer: Ruqian Lyu <xiaoru.best at gmail.com>
Citation (from within R, entercitation("comapr")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("comapr")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("comapr")Follow Installation instructions to use this package in your R session.
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