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Bioconductor - SDAMS

SDAMS

This is the released version of SDAMS; for the devel version, see SDAMS.

Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data

Bioconductor version: Release (3.21)

This Package utilizes a Semi-parametric Differential Abundance/expression analysis (SDA) method for metabolomics and proteomics data from mass spectrometry as well as single-cell RNA sequencing data. SDA is able to robustly handle non-normally distributed data and provides a clear quantification of the effect size.

Author: Yuntong Li <liyuntong0704 at gmail.com>, Chi Wang <chi.wang at uky.edu>, Li Chen <lichenuky at uky.edu>

Maintainer: Yuntong Li <liyuntong0704 at gmail.com>

Citation (from within R, enter citation("SDAMS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SDAMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SDAMS")
Details biocViews DifferentialExpression, ImmunoOncology, MassSpectrometry, Metabolomics, Proteomics, SingleCell, Software Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL Depends R (>= 3.5), SummarizedExperiment Imports trust, qvalue, methods, stats, utils System Requirements URL See More Suggests testthat Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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