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Bioconductor - Omixer

Omixer

This is the released version of Omixer; for the devel version, see Omixer.

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: Release (3.21)

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Citation (from within R, enter citation("Omixer")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")

Details biocViews DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization Version 1.18.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License MIT + file LICENSE Depends R (>= 4.0.0) Imports dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr System Requirements URL Bug Reports https://github.com/molepi/Omixer/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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