A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/release/bioc/html/../../bioc/html/../../bioc/html/MLP.html below:

Bioconductor - MLP

MLP

This is the released version of MLP; for the devel version, see MLP.

Mean Log P Analysis

Bioconductor version: Release (3.21)

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Author: Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre], Katarzyna Gorczak [ctb]

Maintainer: Tobias Verbeke <tobias.verbeke at openanalytics.eu>

Citation (from within R, enter citation("MLP")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MLP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLP")
Details biocViews GO, GeneExpression, Genetics, KEGG, Pathways, Reactome, Software Version 1.56.0 In Bioconductor since BioC 2.8 (R-2.13) (14 years) License GPL-3 Depends Imports AnnotationDbi, gplots, graphics, stats, utils System Requirements URL See More Suggests GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Cf.eg.db, org.Mmu.eg.db, KEGGREST, annotate, Rgraphviz, GOstats, graph, limma, mouse4302.db, reactome.db Linking To Enhances Depends On Me Imports Me esetVis Suggests Me a4 Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4