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Bioconductor - HiTC

HiTC

This is the released version of HiTC; for the devel version, see HiTC.

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: Release (3.21)

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

Citation (from within R, enter citation("HiTC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiTC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiTC")
Details biocViews HiC, HighThroughputSequencing, Sequencing, Software Version 1.52.0 In Bioconductor since BioC 2.10 (R-2.15) (13.5 years) License Artistic-2.0 Depends R (>= 2.15.0), methods, IRanges, GenomicRanges Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix, parallel, GenomeInfoDb System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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