This is the released version of DegCre; for the devel version, see DegCre.
Probabilistic association of DEGs to CREs from differential dataBioconductor version: Release (3.21)
DegCre generates associations between differentially expressed genes (DEGs) and cis-regulatory elements (CREs) based on non-parametric concordance between differential data. The user provides GRanges of DEG TSS and CRE regions with differential p-value and optionally log-fold changes and DegCre returns an annotated Hits object with associations and their calculated probabilities. Additionally, the package provides functionality for visualization and conversion to other formats.
Author: Brian S. Roberts [aut, cre] ORCID: 0009-0001-2914-6826
Maintainer: Brian S. Roberts <brianroberts1976 at yahoo.com>
Citation (from within R, entercitation("DegCre")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DegCre")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DegCre")Follow Installation instructions to use this package in your R session.
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