This is the development version of ExpHunterSuite; for the stable release version, see ExpHunterSuite.
Package For The Comprehensive Analysis Of Transcriptomic DataBioconductor version: Development (3.22)
The ExpHunterSuite implements a comprehensive protocol for the analysis of transcriptional data using established *R* packages and combining their results. It covers all key steps in DEG detection, CEG detection and functional analysis for RNA-seq data. It has been implemented as an R package containing functions that can be run interactively. In addition, it also contains scripts that wrap the functions and can be run directly from the command line.
Author: James Perkins [aut, cre] ORCID: 0000-0003-4108-096X , Pedro Seoane Zonjic [aut] ORCID: 0000-0002-3020-1415 , Fernando Moreno Jabato [aut] ORCID: 0000-0001-7498-1962 , José Córdoba Caballero [aut] ORCID: 0000-0002-1821-5742 , Elena Rojano Rivera [aut] ORCID: 0000-0002-2678-710X , Rocio Bautista Moreno [aut] ORCID: 0000-0003-1685-8119 , M. Gonzalo Claros [aut] ORCID: 0000-0002-0112-3550 , Isabel Gonzalez Gayte [aut], Juan Antonio GarcÃa Ranea [aut] ORCID: 0000-0003-0327-1837
Maintainer: James Perkins <jimrperkins at gmail.com>
Citation (from within R, entercitation("ExpHunterSuite")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ExpHunterSuite")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExpHunterSuite")Follow Installation instructions to use this package in your R session.
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