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Bioconductor - Rqc (development version)

Rqc

This is the development version of Rqc; for the stable release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: Development (3.22)

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rqc")
Details biocViews DataImport, QualityControl, Sequencing, Software Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL (>= 2) Depends BiocParallel, ShortRead, ggplot2 Imports BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles System Requirements URL https://github.com/labbcb/Rqc Bug Reports https://github.com/labbcb/Rqc/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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