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Showing content from https://www.bioconductor.org/packages/devel/workflows/html/../../bioc/html/../../bioc/html/RCX.html below:

Bioconductor - RCX (development version)

RCX

This is the development version of RCX; for the stable release version, see RCX.

R package implementing the Cytoscape Exchange (CX) format

Bioconductor version: Development (3.22)

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

Author: Florian Auer [aut, cre] ORCID: 0000-0002-5320-8900

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("RCX")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RCX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCX")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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