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Bioconductor - scpdata (development version)

scpdata

This is the development version of scpdata; for the stable release version, see scpdata.

Single-Cell Proteomics Data Package

Bioconductor version: Development (3.22)

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] ORCID: 0000-0001-7443-5427 , Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Enes Ayar [dtc] ORCID: 0000-0001-8881-9800 , Samuel Grégoire [dtc] ORCID: 0000-0002-0900-7677

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Citation (from within R, enter citation("scpdata")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")
Details biocViews ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData Version 1.17.1 License GPL-2 Depends R (>= 4.2.0), QFeatures, ExperimentHub Imports utils, AnnotationHub, SingleCellExperiment, S4Vectors System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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