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Showing content from https://www.bioconductor.org/packages/devel/data/experiment/html/RTCGA.miRNASeq.html below:

Bioconductor - RTCGA.miRNASeq (development version)

RTCGA.miRNASeq

This is the development version of RTCGA.miRNASeq; for the stable release version, see RTCGA.miRNASeq.

miRNASeq datasets from The Cancer Genome Atlas Project

Bioconductor version: Development (3.22)

Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview Data from 2015-11-01 snapshot.

Author: Witold Chodor <witoldchodor at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.miRNASeq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTCGA.miRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.miRNASeq")
Using RTCGA to download miRNASeq data as included in RTCGA.miRNASeq HTML R Script Reference Manual PDF NEWS Text Details See More Package Archives

Follow Installation instructions to use this package in your R session.

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