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Showing content from https://www.bioconductor.org/packages/devel/data/experiment/html/MouseGastrulationData.html below:

Bioconductor - MouseGastrulationData (development version)

MouseGastrulationData

This is the development version of MouseGastrulationData; for the stable release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: Development (3.22)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")
Details biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData Version 1.23.0 License GPL-3 Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix System Requirements URL https://github.com/MarioniLab/MouseGastrulationData Bug Reports https://github.com/MarioniLab/MouseGastrulationData/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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