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Bioconductor - MethylSeqData (development version)

MethylSeqData

This is the development version of MethylSeqData; for the stable release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets

Bioconductor version: Development (3.22)

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MethylSeqData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")
Details biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData Version 1.19.0 License CC0 Depends SummarizedExperiment Imports ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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