This is the development version of FieldEffectCrc; for the stable release version, see FieldEffectCrc.
Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objectsBioconductor version: Development (3.22)
Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).
Author: Christopher Dampier [aut, cre] ORCID: 0000-0003-3099-6462 , Bioconductor Package Maintainer [ctb]
Maintainer: Christopher Dampier <chd5n at virginia.edu>
Citation (from within R, entercitation("FieldEffectCrc")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("FieldEffectCrc")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FieldEffectCrc")Follow Installation instructions to use this package in your R session.
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