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Showing content from https://www.bioconductor.org/packages/devel/data/experiment/html/../html/TENET.ExperimentHub.html below:

Bioconductor - TENET.ExperimentHub (development version)

TENET.ExperimentHub

This is the development version of TENET.ExperimentHub; for the stable release version, see TENET.ExperimentHub.

Experiment data for the TENET package

Bioconductor version: Development (3.22)

ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.

Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] ORCID: 0000-0002-7639-0549 , Zexun Wu [aut] ORCID: 0000-0003-2566-1326 , Ethan Nelson-Moore [aut] ORCID: 0009-0001-6903-9232 , Suhn Rhie [aut] ORCID: 0000-0002-5522-5296

Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>

Citation (from within R, enter citation("TENET.ExperimentHub")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TENET.ExperimentHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENET.ExperimentHub")
Details biocViews BreastCancerData, CancerData, CellCulture, ExperimentData, ExperimentHub, ExpressionData, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, RNASeqData, Tissue Version 1.1.0 License GPL-2 Depends R (>= 4.5) Imports ExperimentHub, SummarizedExperiment, MultiAssayExperiment, GenomicRanges, methods System Requirements URL https://github.com/rhielab/TENET.ExperimentHub Bug Reports https://github.com/rhielab/TENET.ExperimentHub/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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