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Bioconductor - schex (development version)

schex

This is the development version of schex; for the stable release version, see schex.

Hexbin plots for single cell omics data

Bioconductor version: Development (3.22)

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

Author: Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb]

Maintainer: Saskia Freytag <freytag.s at wehi.edu.au>

Citation (from within R, enter citation("schex")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("schex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("schex")
Details biocViews DataImport, DimensionReduction, ImmunoOncology, Sequencing, SingleCell, Software, Visualization Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL-3 Depends SingleCellExperiment(>= 1.7.4), ggplot2 (>= 3.2.1) Imports hexbin, stats, methods, cluster, dplyr, entropy, ggforce, grid, rlang, concaveman System Requirements URL https://github.com/SaskiaFreytag/schex Bug Reports https://github.com/SaskiaFreytag/schex/issues See More Suggests ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr, TENxPBMCData, scater, Seurat, shinydashboard, iSEE, igraph, scran, tibble, scuttle Linking To Enhances Depends On Me Imports Me scTensor, scTGIF Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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