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Bioconductor - arrayMvout (development version)

arrayMvout

This is the development version of arrayMvout; for the stable release version, see arrayMvout.

multivariate outlier detection for expression array QA

Bioconductor version: Development (3.22)

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("arrayMvout")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("arrayMvout")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayMvout")
arrayMvout -- multivariate outlier algorithm for expression arrays PDF R Script Reference Manual PDF Details biocViews Infrastructure, Microarray, QualityControl, Software Version 1.67.0 In Bioconductor since BioC 2.3 (R-2.8) (16.5 years) License Artistic-2.0 Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy Imports mdqc, affyContam, lumi System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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