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Showing content from https://www.bioconductor.org/packages/devel/data/annotation/html/geneplast.data.html below:

Bioconductor - geneplast.data (development version)

geneplast.data

This is the development version of geneplast.data; for the stable release version, see geneplast.data.

Input data for the geneplast package via AnnotationHub

Bioconductor version: Development (3.22)

The package geneplast.data provides datasets from different sources via AnnotationHub to use in geneplast pipelines. The datasets have species, phylogenetic trees, and orthology relationships among eukaryotes from different orthologs databases.

Author: Leonardo Campos [aut, cre], Danilo Imparato [aut], Rodrigo Dalmolin [aut], Mauro Castro [aut]

Maintainer: Leonardo Campos <leofields at gmail.com>

Citation (from within R, enter citation("geneplast.data")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("geneplast.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplast.data")
Supporting data for geneplast evolutionary analyses HTML R Script Reference Manual PDF NEWS Text Details biocViews AnnotationData, AnnotationHub, GeneRegulation, Genetics, SystemsBiology Version 0.99.9 License Artistic-2.0 Depends R (>= 4.0) Imports ape, treeio, tibble, tidyr, dplyr, readr, purrr, igraph, geneplast, BiocFileCache System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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