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Bioconductor - JASPAR2022 (development version)

This is the development version of JASPAR2022; for the stable release version, see JASPAR2022.

Bioconductor version: Development (3.22)

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

Author: Damir Baranasic [aut, cre] ORCID: 0000-0001-5948-0932

Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("JASPAR2022")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JASPAR2022")

Follow Installation instructions to use this package in your R session.

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