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Bioconductor - goseq (development version)

goseq

This is the development version of goseq; for the stable release version, see goseq.

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: Development (3.22)

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre] ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("goseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("goseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")
Details biocViews Annotation, DifferentialExpression, GO, GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Pathways, RNASeq, Sequencing, Software, Transcription Version 1.61.0 In Bioconductor since BioC 2.6 (R-2.11) (15 years) License LGPL (>= 2) Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase(>= 1.9.2) Imports mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics, methods, rtracklayer, GenomicFeatures, GenomeInfoDb System Requirements URL https://github.com/federicomarini/goseq Bug Reports https://github.com/federicomarini/goseq/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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