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Bioconductor - chimeraviz (development version)

chimeraviz

This is the development version of chimeraviz; for the stable release version, see chimeraviz.

Visualization tools for gene fusions

Bioconductor version: Development (3.22)

chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Author: Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb]

Maintainer: Stian LÃ¥gstad <stianlagstad at gmail.com>

Citation (from within R, enter citation("chimeraviz")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chimeraviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chimeraviz")
Details biocViews Alignment, Infrastructure, Software Version 1.35.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter, data.table Imports methods, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos, org.Hs.eg.db, org.Mm.eg.db, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, checkmate, gtools, magick System Requirements bowtie, samtools, and egrep are required for some functionalities URL https://github.com/stianlagstad/chimeraviz Bug Reports https://github.com/stianlagstad/chimeraviz/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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