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Showing content from https://www.bioconductor.org/packages/devel/data/annotation/html/../../../bioc/html/bioCancer.html below:

Bioconductor - bioCancer (development version)

bioCancer

This is the development version of bioCancer; for the stable release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: Development (3.22)

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")
bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization Version 1.37.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License AGPL-3 | file LICENSE Depends R (>= 4.1.0), radiant.data (>= 0.9.1), cBioPortalData, XML (>= 3.98) Imports R.oo, R.methodsS3, DT (>= 0.3), dplyr (>= 0.7.2), tidyr, shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db System Requirements URL https://kmezhoud.github.io/bioCancer/ Bug Reports https://github.com/kmezhoud/bioCancer/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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