A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/data/annotation/html/../../../bioc/html/TCGAutils.html below:

Bioconductor - TCGAutils (development version)

TCGAutils

This is the development version of TCGAutils; for the stable release version, see TCGAutils.

TCGA utility functions for data management

Bioconductor version: Development (3.22)

A suite of helper functions for checking and manipulating TCGA data including data obtained from the curatedTCGAData experiment package. These functions aim to simplify and make working with TCGA data more manageable. Exported functions include those that import data from flat files into Bioconductor objects, convert row annotations, and identifier translation via the GDC API.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Lucas Schiffer [aut], Sean Davis [ctb], Levi Waldron [aut]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("TCGAutils")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TCGAutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCGAutils")
Details biocViews DataImport, Preprocessing, Software, WorkflowStep Version 1.29.5 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License Artistic-2.0 Depends R (>= 4.5.0) Imports AnnotationDbi, BiocGenerics, BiocBaseUtils, GenomeInfoDb, GenomicFeatures, GenomicRanges, GenomicDataCommons, IRanges, methods, MultiAssayExperiment, RaggedExperiment, rvest, S4Vectors, Seqinfo, stats, stringr, SummarizedExperiment, utils, xml2 System Requirements URL Bug Reports https://github.com/waldronlab/TCGAutils/issues See More Suggests AnnotationHub, BiocStyle, curatedTCGAData, ComplexHeatmap, devtools, dplyr, httr, IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr, magrittr, org.Hs.eg.db, RColorBrewer, readr, rmarkdown, RTCGAToolbox, rtracklayer, R.utils, testthat, TxDb.Hsapiens.UCSC.hg18.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene Linking To Enhances Depends On Me Imports Me cBioPortalData, glmSparseNet, RTCGAToolbox, terraTCGAdata Suggests Me CNVRanger, curatedTCGAData Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4