This is the development version of CaMutQC; for the stable release version, see CaMutQC.
An R Package for Comprehensive Filtration and Selection of Cancer Somatic MutationsBioconductor version: Development (3.22)
CaMutQC is able to filter false positive mutations generated due to technical issues, as well as to select candidate cancer mutations through a series of well-structured functions by labeling mutations with various flags. And a detailed and vivid filter report will be offered after completing a whole filtration or selection section. Also, CaMutQC integrates serveral methods and gene panels for Tumor Mutational Burden (TMB) estimation.
Author: Xin Wang [aut, cre] ORCID: 0000-0002-6072-599X
Maintainer: Xin Wang <sylviawang555 at gmail.com>
Citation (from within R, entercitation("CaMutQC")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CaMutQC")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CaMutQC")Follow Installation instructions to use this package in your R session.
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