This is the development version of xCell2; for the stable release version, see xCell2.
A Tool for Generic Cell Type Enrichment AnalysisBioconductor version: Development (3.22)
xCell2 provides methods for cell type enrichment analysis using cell type signatures. It includes three main functions - 1. xCell2Train for training custom references objects from bulk or single-cell RNA-seq datasets. 2. xCell2Analysis for conducting the cell type enrichment analysis using the custom reference. 3. xCell2GetLineage for identifying dependencies between different cell types using ontology.
Author: Almog Angel [aut, cre] ORCID: 0009-0001-3297-6935 , Dvir Aran [aut] ORCID: 0000-0001-6334-5039
Maintainer: Almog Angel <almog.angel at campus.technion.ac.il>
Citation (from within R, entercitation("xCell2")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("xCell2")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("xCell2")Follow Installation instructions to use this package in your R session.
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