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Bioconductor - tidysbml (development version)

This is the development version of tidysbml; for the stable release version, see tidysbml.

Bioconductor version: Development (3.22)

Starting from one SBML file, it extracts information from each listOfCompartments, listOfSpecies and listOfReactions element by saving them into data frames. Each table provides one row for each entity (i.e. either compartment, species, reaction or speciesReference) and one set of columns for the attributes, one column for the content of the 'notes' subelement and one set of columns for the content of the 'annotation' subelement.

Author: Veronica Paparozzi [aut, cre] ORCID: 0009-0000-2961-1559 , Christine Nardini [aut] ORCID: 0000-0001-7601-321X

Maintainer: Veronica Paparozzi <veronicapaparozzi1 at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidysbml")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidysbml")

Follow Installation instructions to use this package in your R session.

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