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Bioconductor - shinyMethyl (development version)

shinyMethyl

This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.

Interactive visualization for Illumina methylation arrays

Bioconductor version: Development (3.22)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("shinyMethyl")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")
shinyMethyl: interactive visualization of Illumina 450K methylation arrays HTML R Script Reference Manual PDF NEWS Text Details biocViews DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel Version 1.45.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License Artistic-2.0 Depends Imports Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils System Requirements URL https://github.com/Jfortin1/shinyMethyl Bug Reports https://github.com/Jfortin1/shinyMethyl See More Package Archives

Follow Installation instructions to use this package in your R session.


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