This is the development version of seqsetvis; for the stable release version, see seqsetvis.
Set Based Visualizations for Next-Gen Sequencing DataBioconductor version: Development (3.22)
seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file). seqsetvis has multiple functions for fetching data from regions into a tidy format for analysis in data.table or tidyverse and visualization via ggplot2.
Author: Joseph R Boyd [aut, cre] ORCID: 0000-0002-8969-9676
Maintainer: Joseph R Boyd <jrboyd at uvm.edu>
Citation (from within R, entercitation("seqsetvis")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("seqsetvis")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqsetvis")Follow Installation instructions to use this package in your R session.
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