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Bioconductor - selectKSigs (development version)

selectKSigs

This is the development version of selectKSigs; for the stable release version, see selectKSigs.

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Bioconductor version: Development (3.22)

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]

Maintainer: Zhi Yang <zyang895 at gmail.com>

Citation (from within R, enter citation("selectKSigs")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("selectKSigs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("selectKSigs")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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