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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/screenCounter.html below:

Bioconductor - screenCounter (development version)

This is the development version of screenCounter; for the stable release version, see screenCounter.

Bioconductor version: Development (3.22)

Provides functions for counting reads from high-throughput sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode abundance. Currently supports single barcodes in single- or paired-end data, and combinatorial barcodes in paired-end data.

Author: Aaron Lun [aut, cre] ORCID: 0000-0002-3564-4813

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("screenCounter")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("screenCounter")

Follow Installation instructions to use this package in your R session.

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