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Bioconductor - safe (development version)

safe

This is the development version of safe; for the stable release version, see safe.

Significance Analysis of Function and Expression

Bioconductor version: Development (3.22)

SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author: William T. Barry

Maintainer: Ludwig Geistlinger <ludwig.geistlinger at gmail.com>

Citation (from within R, enter citation("safe")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("safe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("safe")
Details See More Suggests GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats Linking To Enhances Depends On Me Imports Me EGSEA, EnrichmentBrowser Suggests Me ReporterScore Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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