This is the development version of regioneReloaded; for the stable release version, see regioneReloaded.
RegioneReloaded: Multiple Association for Genomic Region SetsBioconductor version: Development (3.22)
RegioneReloaded is a package that allows simultaneous analysis of associations between genomic region sets, enabling clustering of data and the creation of ready-to-publish graphs. It takes over and expands on all the features of its predecessor regioneR. It also incorporates a strategy to improve p-value calculations and normalize z-scores coming from multiple analysis to allow for their direct comparison. RegioneReloaded builds upon regioneR by adding new plotting functions for obtaining publication-ready graphs.
Author: Roberto Malinverni [aut, cre] ORCID: 0000-0002-0113-3417 , David Corujo [aut], Bernat Gel [aut]
Maintainer: Roberto Malinverni <roberto.malinverni at gmail.com>
Citation (from within R, entercitation("regioneReloaded")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("regioneReloaded")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("regioneReloaded")Follow Installation instructions to use this package in your R session.
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