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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/regionalpcs.html below:

Bioconductor - regionalpcs (development version)

This is the development version of regionalpcs; for the stable release version, see regionalpcs.

Bioconductor version: Development (3.22)

Functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.

Author: Tiffany Eulalio [aut, cre] ORCID: 0000-0002-7084-9646

Maintainer: Tiffany Eulalio <tyeulalio at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("regionalpcs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regionalpcs")

Follow Installation instructions to use this package in your R session.

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