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Bioconductor - qPLEXanalyzer (development version)

qPLEXanalyzer

This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.

Tools for quantitative proteomics data analysis

Bioconductor version: Development (3.22)

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")
Details biocViews DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software Version 1.27.0 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License GPL-2 Depends R (>= 4.0), Biobase, MSnbase Imports assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils System Requirements URL Bug Reports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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