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Bioconductor - proBAMr (development version)

proBAMr

This is the development version of proBAMr; for the stable release version, see proBAMr.

Generating SAM file for PSMs in shotgun proteomics data

Bioconductor version: Development (3.22)

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("proBAMr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("proBAMr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")
Details biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization Version 1.43.1 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License Artistic-2.0 Depends R (>= 3.0.1), IRanges, AnnotationDbi Imports GenomicRanges, Biostrings, GenomicFeatures, txdbmaker, rtracklayer System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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