A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/bioc/html/motifmatchr.html below:

Bioconductor - motifmatchr (development version)

motifmatchr

This is the development version of motifmatchr; for the stable release version, see motifmatchr.

Fast Motif Matching in R

Bioconductor version: Development (3.22)

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

Author: Alicia Schep [aut, cre], Stanford University [cph]

Maintainer: Alicia Schep <aschep at gmail.com>

Citation (from within R, enter citation("motifmatchr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("motifmatchr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifmatchr")
Details biocViews MotifAnnotation, Software Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License GPL-3 + file LICENSE Depends R (>= 3.3) Imports Matrix, Rcpp, methods, TFBSTools, Biostrings, BSgenome, S4Vectors, SummarizedExperiment, GenomicRanges, IRanges, Rsamtools, GenomeInfoDb System Requirements C++11 URL See More Suggests testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19 Linking To Rcpp, RcppArmadillo Enhances Depends On Me Imports Me ATACseqTFEA, enhancerHomologSearch, epiregulon, esATAC, pageRank, spatzie Suggests Me chromVAR, GRaNIE, MethReg, CAGEWorkflow, Signac Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4