This is the development version of microSTASIS; for the stable release version, see microSTASIS.
Microbiota STability ASsessment via Iterative cluSteringBioconductor version: Development (3.22)
The toolkit 'µSTASIS', or microSTASIS, has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
Author: Pedro Sánchez-Sánchez [aut, cre] ORCID: 0000-0002-4846-1813 , Alfonso BenÃtez-Páez [aut] ORCID: 0000-0001-5707-4340
Maintainer: Pedro Sánchez-Sánchez <bio.pedro.technology at gmail.com>
Citation (from within R, entercitation("microSTASIS")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("microSTASIS")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microSTASIS")Follow Installation instructions to use this package in your R session.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4