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Bioconductor - methylPipe (development version)

methylPipe

This is the development version of methylPipe; for the stable release version, see methylPipe.

Base resolution DNA methylation data analysis

Bioconductor version: Development (3.22)

Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]

Maintainer: Mattia Furlan <mattia.furlan at iit.it>

Citation (from within R, enter citation("methylPipe")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methylPipe")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylPipe")
Details biocViews Coverage, DNAMethylation, MethylSeq, Sequencing, Software Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL(>=2) Depends R (>= 3.5.0), methods, grDevices, graphics, stats, utils, GenomicRanges, SummarizedExperiment(>= 0.2.0), Rsamtools Imports marray, gplots, IRanges, BiocGenerics, Gviz, GenomicAlignments, Biostrings, parallel, data.table, GenomeInfoDb, S4Vectors System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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