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Bioconductor - methInheritSim (development version)

methInheritSim

This is the development version of methInheritSim; for the stable release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Development (3.22)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, enter citation("methInheritSim")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")
Simulating Whole-Genome Inherited Bisulphite Sequencing Data HTML R Script Reference Manual PDF README Text NEWS Text Details biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 3.5.0) Imports methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm System Requirements URL https://github.com/belleau/methInheritSim Bug Reports https://github.com/belleau/methInheritSim/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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