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Bioconductor - isomiRs (development version)

isomiRs

This is the development version of isomiRs; for the stable release version, see isomiRs.

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: Development (3.22)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("isomiRs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")
Details biocViews Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License MIT + file LICENSE Depends R (>= 4.4), SummarizedExperiment Imports AnnotationDbi, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble System Requirements URL Bug Reports https://github.com/lpantano/isomiRs/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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