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Bioconductor - interactiveDisplay (development version)

interactiveDisplay

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of interactiveDisplay; for the stable release version, see interactiveDisplay.

Package for enabling powerful shiny web displays of Bioconductor objects

Bioconductor version: Development (3.22)

The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects.

Author: Bioconductor Package Maintainer [cre], Shawn Balcome [aut], Marc Carlson [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("interactiveDisplay")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("interactiveDisplay")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interactiveDisplay")
interactiveDisplay: A package for enabling interactive visualization of Bioconductor objects PDF R Script Reference Manual PDF Details biocViews AnnotationData, Classification, DataRepresentation, GO, GUI, GeneExpression, Genetics, Microarray, Network, QualityControl, Sequencing, ShinyApps, Software, Visualization Version 1.47.1 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License Artistic-2.0 Depends R (>= 3.5.0), methods, BiocGenerics, grid Imports interactiveDisplayBase(>= 1.7.3), shiny, RColorBrewer, ggplot2, reshape2, plyr, gridSVG, XML, Category, AnnotationDbi System Requirements URL See More Suggests RUnit, hgu95av2.db, knitr, GenomicRanges, SummarizedExperiment, GOstats, ggbio, GO.db, Gviz, rtracklayer, metagenomeSeq, gplots, vegan, Biobase Linking To Enhances rstudio Depends On Me Imports Me Suggests Me metagenomeSeq Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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