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Bioconductor - iCOBRA (development version)

iCOBRA

This is the development version of iCOBRA; for the stable release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Development (3.22)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre] ORCID: 0000-0003-3833-2169

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")
Details biocViews Classification, Software, Visualization Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL (>=2) Depends R (>= 4.4.0) Imports shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 3.4.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils, rlang System Requirements URL https://github.com/csoneson/iCOBRA Bug Reports https://github.com/csoneson/iCOBRA/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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