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Bioconductor - ggmanh (development version)

ggmanh

This is the development version of ggmanh; for the stable release version, see ggmanh.

Visualization Tool for GWAS Result

Bioconductor version: Development (3.22)

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

Author: John Lee [aut, cre], John Lee [aut] (AbbVie), Xiuwen Zheng [ctb, dtc]

Maintainer: John Lee <swannyy.stat at gmail.com>

Citation (from within R, enter citation("ggmanh")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggmanh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggmanh")
Details biocViews Genetics, GenomeWideAssociation, Software, Visualization Version 1.13.0 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License MIT + file LICENSE Depends methods, ggplot2 Imports gdsfmt, ggrepel, grDevices, paletteer, RColorBrewer, rlang, scales, SeqArray(>= 1.32.0), stats, tidyr, dplyr, pals, magrittr System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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