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Bioconductor - gg4way (development version)

gg4way

This is the development version of gg4way; for the stable release version, see gg4way.

4way Plots of Differential Expression

Bioconductor version: Development (3.22)

4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.

Author: Benjamin I Laufer [aut, cre], Brad A Friedman [aut]

Maintainer: Benjamin I Laufer <blaufer at gmail.com>

Citation (from within R, enter citation("gg4way")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gg4way")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gg4way")
Details biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcription, Visualization Version 1.7.1 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License MIT + file LICENSE Depends R (>= 4.3.0), ggplot2 Imports DESeq2, dplyr, edgeR, ggrepel, glue, janitor, limma, magrittr, methods, purrr, rlang, scales, stats, stringr, tibble, tidyr System Requirements URL https://github.com/ben-laufer/gg4way Bug Reports https://github.com/ben-laufer/gg4way/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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