This is the development version of flowSpecs; for the stable release version, see flowSpecs.
Tools for processing of high-dimensional cytometry dataBioconductor version: Development (3.22)
This package is intended to fill the role of conventional cytometry pre-processing software, for spectral decomposition, transformation, visualization and cleanup, and to aid further downstream analyses, such as with DepecheR, by enabling transformation of flowFrames and flowSets to dataframes. Functions for flowCore-compliant automatic 1D-gating/filtering are in the pipe line. The package name has been chosen both as it will deal with spectral cytometry and as it will hopefully give the user a nice pair of spectacles through which to view their data.
Author: Jakob Theorell [aut, cre]
Maintainer: Jakob Theorell <jakob.theorell at ki.se>
Citation (from within R, entercitation("flowSpecs")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("flowSpecs")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowSpecs")Follow Installation instructions to use this package in your R session.
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