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Bioconductor - esetVis (development version)

esetVis

This is the development version of esetVis; for the stable release version, see esetVis.

Visualizations of expressionSet Bioconductor object

Bioconductor version: Development (3.22)

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("esetVis")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("esetVis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("esetVis")
Details biocViews DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-3 Depends Imports mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices, methods System Requirements URL See More Suggests ggplot2, ggvis, plotly, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment, GO.db Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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